------- SECIS element -- id:1 -- grade:A ---- Chromosome = OMLM01015868.1:subseq_0,51105_ Strand = - Positions = 38951 - 38873 Found by: Infernal (score=31.71) Covels (score=36.58) Stem2 length = 10 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -13.55 ..(((((((.......(((((((((((((((................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc (((((([{(.......{[[{(((({((((((................))))))}))))}]]}.....-...)}])))))) target UAUUGAAAGCUUAUAAUGACGCCAUUCCUGUAAAUGGUCCUUAACCAGUAGGAUUGGCUGAUGAUUU-UCACAGUCAGUG **** ^^^ **** ------- SECIS element -- id:2 -- grade:C ---- Chromosome = OMLM01015868.1:subseq_0,51105_ Strand = - Positions = 46073 - 45995 Found by: Infernal (score=10.82) Covels (score=1.56) Stem2 length = 9 Apical loop length = 17 Insertion in stem2 = 1, 0 Free Energy = -9.36 ..(((((((.......((((((((((.(((((...................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (([(((((((--....([[{(({(((.{(({(((...............)))}))})))}))}]])..--...)))))))])) target CCAUGUUUUU--UGAAUGAUGUGUGUUUCUUUCAGAUUCACUCCUGGUGUGGCAGCACAGACUGAGAA--GAUGAGGACAGGG **** **** ------- SECIS element -- id:3 -- grade:C ---- Chromosome = OMLM01015868.1:subseq_0,51105_ Strand = + Positions = 21689 - 21762 Found by: Infernal (score=10.29) Covels (score=0.81) Stem2 length = 9 Apical loop length = 15 Insertion in stem2 = 1, 0 Free Energy = -14.06 ..(((((((.......((((((((((.(((((...............)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc ..(((((((---....([[((({{((.(((((...............)))))))}})))]])..--....))))))).. target GUGACUUGU---AUGUUGAAGGGCUGUACUCAAGACCAAAUCCAAAAUGGGUCAAGUCUGAGUC--AAGAACAAGUCCA **** ^^ ****